BLASTN 2.6.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: male
           8,438,646 sequences; 585,046,534 total letters



Query= HQ166029.1 Simmondsia chinensis clone pkmssj male specific sequence

Length=1117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

male_41762593_length_57_cov_4.561403                                  137     1e-30
male_34160299_length_57_cov_1.894737                                  132     6e-29
male_25200674_length_45_cov_2.933333                                  121     1e-25
male_4221653_length_38_cov_3.947368                                   108     1e-21
male_33480535_length_28_cov_3.392857                                  89.8    4e-16
male_34160298_length_21_cov_3.285714                                  76.8    3e-12
male_22594645_length_21_cov_3.571429                                  76.8    3e-12


>male_41762593_length_57_cov_4.561403 
Length=77

 Score = 137 bits (74),  Expect = 1e-30
 Identities = 76/77 (99%), Gaps = 0/77 (0%)
 Strand=Plus/Minus

Query  812  CTCAGGCCCAACCTCCACAGACCCATCTCTGCTCAGATCCACATCGACCACAGCAATGCA  871
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  77   CTCAAGCCCAACCTCCACAGACCCATCTCTGCTCAGATCCACATCGACCACAGCAATGCA  18

Query  872  AGCCCATCTCATTGATA  888
            |||||||||||||||||
Sbjct  17   AGCCCATCTCATTGATA  1


>male_34160299_length_57_cov_1.894737 
Length=77

 Score = 132 bits (71),  Expect = 6e-29
 Identities = 75/77 (97%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  921  CGGCCCAACAACACCAGCAGGGGCCCAGCGTCTAGCCTATCTGAGCATCTGCTCACAGCC  980
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1    CGGCCCAACAACACCAGCAGGGGCCCAGCGTCTAGCCTATCTGAGCGTCTGCTCACAGCC  60

Query  981  TTAGCCTAGCTCGCCAG  997
            | |||||||||||||||
Sbjct  61   TCAGCCTAGCTCGCCAG  77


>male_25200674_length_45_cov_2.933333 
Length=65

 Score = 121 bits (65),  Expect = 1e-25
 Identities = 65/65 (100%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  116  AAGCTCCTGCACTGCTCAATAGGTTACCCCTAAAACTACCCCCCACAAAGCTCTAACTAG  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAGCTCCTGCACTGCTCAATAGGTTACCCCTAAAACTACCCCCCACAAAGCTCTAACTAG  60

Query  176  GGCCA  180
            |||||
Sbjct  61   GGCCA  65


>male_4221653_length_38_cov_3.947368 
Length=58

 Score = 108 bits (58),  Expect = 1e-21
 Identities = 58/58 (100%), Gaps = 0/58 (0%)
 Strand=Plus/Plus

Query  662  CCAGCACCCAATCTCAGCCCGATGACATCGTCCCCTCCGTCTTGCGTCCTATTCAACA  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CCAGCACCCAATCTCAGCCCGATGACATCGTCCCCTCCGTCTTGCGTCCTATTCAACA  58


>male_33480535_length_28_cov_3.392857 
Length=48

 Score = 89.8 bits (48),  Expect = 4e-16
 Identities = 48/48 (100%), Gaps = 0/48 (0%)
 Strand=Plus/Plus

Query  750  GTCCAACCTCTTGTCCAGATCAGCTAACCCCACCTGCGCCCACCGTGT  797
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTCCAACCTCTTGTCCAGATCAGCTAACCCCACCTGCGCCCACCGTGT  48


>male_34160298_length_21_cov_3.285714 
Length=41

 Score = 76.8 bits (41),  Expect = 3e-12
 Identities = 41/41 (100%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  895  CAGCACCGAGTCCAGTGTTCCGCTTCCGGCCCAACAACACC  935
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CAGCACCGAGTCCAGTGTTCCGCTTCCGGCCCAACAACACC  41


>male_22594645_length_21_cov_3.571429 
Length=41

 Score = 76.8 bits (41),  Expect = 3e-12
 Identities = 41/41 (100%), Gaps = 0/41 (0%)
 Strand=Plus/Minus

Query  521  GGTGCAAATAAGACAAACTCAATACCTAAACAATTAAATCA  561
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  41   GGTGCAAATAAGACAAACTCAATACCTAAACAATTAAATCA  1



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 379804481694


  Database: male
    Posted date:  Dec 15, 2019  2:42 PM
  Number of letters in database: 585,046,534
  Number of sequences in database:  8,438,646



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5