BLASTN 2.6.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: female
           8,630,348 sequences; 594,531,858 total letters



Query= HQ166029.1 Simmondsia chinensis clone pkmssj male specific sequence

Length=1117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

female_13420524_length_63_cov_1.317460                                148     6e-34
female_46200820_length_38_cov_1.210526                                108     1e-21
female_19839797_length_35_cov_1.142857                                97.1    2e-18
female_49948241_length_32_cov_1.156250                                91.6    1e-16
female_49948242_length_28_cov_1.000000                                89.8    4e-16
female_44504938_length_21_cov_1.000000                                76.8    3e-12
female_53875925_length_26_cov_1.000000                                75.0    1e-11


>female_13420524_length_63_cov_1.317460 
Length=83

 Score = 148 bits (80),  Expect = 6e-34
 Identities = 82/83 (99%), Gaps = 0/83 (0%)
 Strand=Plus/Minus

Query  806  ACCCACCTCAGGCCCAACCTCCACAGACCCATCTCTGCTCAGATCCACATCGACCACAGC  865
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  83   ACCCACCTCAAGCCCAACCTCCACAGACCCATCTCTGCTCAGATCCACATCGACCACAGC  24

Query  866  AATGCAAGCCCATCTCATTGATA  888
            |||||||||||||||||||||||
Sbjct  23   AATGCAAGCCCATCTCATTGATA  1


>female_46200820_length_38_cov_1.210526 
Length=58

 Score = 108 bits (58),  Expect = 1e-21
 Identities = 58/58 (100%), Gaps = 0/58 (0%)
 Strand=Plus/Minus

Query  662  CCAGCACCCAATCTCAGCCCGATGACATCGTCCCCTCCGTCTTGCGTCCTATTCAACA  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   CCAGCACCCAATCTCAGCCCGATGACATCGTCCCCTCCGTCTTGCGTCCTATTCAACA  1


>female_19839797_length_35_cov_1.142857 
Length=55

 Score = 97.1 bits (52),  Expect = 2e-18
 Identities = 54/55 (98%), Gaps = 0/55 (0%)
 Strand=Plus/Minus

Query  1046  GGGTTCTGCTCTGTTTTGGGGGCTAATTTATGACATCCTAActctctttctctca  1100
             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  55    GGGTTCTGCTCTGTTTTGGGGGCTAATTTTTGACATCCTAACTCTCTTTCTCTCA  1


>female_49948241_length_32_cov_1.156250 
Length=52

 Score = 91.6 bits (49),  Expect = 1e-16
 Identities = 51/52 (98%), Gaps = 0/52 (0%)
 Strand=Plus/Plus

Query  714  TCAACACCAACAGTCCAGCTAACTCCAGTCAGCCCAGTCCAACCTCTTGTCC  765
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCAACACCAACAGCCCAGCTAACTCCAGTCAGCCCAGTCCAACCTCTTGTCC  52


>female_49948242_length_28_cov_1.000000 
Length=48

 Score = 89.8 bits (48),  Expect = 4e-16
 Identities = 48/48 (100%), Gaps = 0/48 (0%)
 Strand=Plus/Plus

Query  750  GTCCAACCTCTTGTCCAGATCAGCTAACCCCACCTGCGCCCACCGTGT  797
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTCCAACCTCTTGTCCAGATCAGCTAACCCCACCTGCGCCCACCGTGT  48


>female_44504938_length_21_cov_1.000000 
Length=41

 Score = 76.8 bits (41),  Expect = 3e-12
 Identities = 41/41 (100%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  895  CAGCACCGAGTCCAGTGTTCCGCTTCCGGCCCAACAACACC  935
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CAGCACCGAGTCCAGTGTTCCGCTTCCGGCCCAACAACACC  41


>female_53875925_length_26_cov_1.000000 
Length=46

 Score = 75.0 bits (40),  Expect = 1e-11
 Identities = 44/46 (96%), Gaps = 0/46 (0%)
 Strand=Plus/Minus

Query  358  TAGGAGCACTGATCGCACAGTACTACTGATACGTCTCAGATTTACG  403
            |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct  46   TAGGAGCACTAATCGCCCAGTACTACTGATACGTCTCAGATTTACG  1



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 384288622146


  Database: female
    Posted date:  Dec 15, 2019  2:34 PM
  Number of letters in database: 594,531,858
  Number of sequences in database:  8,630,348



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5