BLASTN 2.6.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: male
           8,438,646 sequences; 585,046,534 total letters



Query= 
Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

male_36992467_length_44_cov_1.681818                                  113     7e-24
male_46074068_length_44_cov_3.000000                                  110     1e-22
male_46074069_length_33_cov_4.393939                                  99.0    2e-19
male_36992469_length_32_cov_3.031250                                  97.1    8e-19
male_36992468_length_22_cov_2.863636                                  73.1    1e-11


>male_36992467_length_44_cov_1.681818 
Length=64

 Score = 113 bits (61),  Expect = 7e-24
 Identities = 64/65 (98%), Gaps = 1/65 (2%)
 Strand=Plus/Minus

Query  196  AGTGGAAATGTAAGGGCGTAGAGATATATCACCCCTTCTGCGTCCTGAATGAAAATTCTA  255
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   AGTGGAAATGT-AGGGCGTAGAGATATATCACCCCTTCTGCGTCCTGAATGAAAATTCTA  6

Query  256  GCTCC  260
            |||||
Sbjct  5    GCTCC  1


>male_46074068_length_44_cov_3.000000 
Length=64

 Score = 110 bits (59),  Expect = 1e-22
 Identities = 61/62 (98%), Gaps = 0/62 (0%)
 Strand=Plus/Minus

Query  330  CATCTCGACACTTGAATCTTTGGTCTTTACTTTTTCCTCCTCGATAATGTTCTCCGGTTT  389
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  64   CATCTCGACACTTGAATCTTTGGTCTTTACTTTTTCCTCCTCGATAATGTTCTCTGGTTT  5

Query  390  GG  391
            ||
Sbjct  4    GG  3


>male_46074069_length_33_cov_4.393939 
Length=53

 Score = 99.0 bits (53),  Expect = 2e-19
 Identities = 53/53 (100%), Gaps = 0/53 (0%)
 Strand=Plus/Minus

Query  285  GTCTACAAATATGTTCCATAACAGGAATTTTTCTGTTTTATCCAGCATCTCGA  337
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  53   GTCTACAAATATGTTCCATAACAGGAATTTTTCTGTTTTATCCAGCATCTCGA  1


>male_36992469_length_32_cov_3.031250 
Length=52

 Score = 97.1 bits (52),  Expect = 8e-19
 Identities = 52/52 (100%), Gaps = 0/52 (0%)
 Strand=Plus/Minus

Query  121  AGGCTCCAATGGTTTGTGTAAGACCAACTCCATGAGTTAGAGCTTCATACTC  172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  52   AGGCTCCAATGGTTTGTGTAAGACCAACTCCATGAGTTAGAGCTTCATACTC  1


>male_36992468_length_22_cov_2.863636 
Length=42

 Score = 73.1 bits (39),  Expect = 1e-11
 Identities = 42/43 (98%), Gaps = 1/43 (2%)
 Strand=Plus/Minus

Query  173  AGCTTCATTATTGGTCAACGAATAGTGGAAATGTAAGGGCGTA  215
            ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  42   AGCTTCATTATTGGTCAACGAATAGTGGAAATGTA-GGGCGTA  1



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 132165144040


  Database: male
    Posted date:  Dec 15, 2019  2:42 PM
  Number of letters in database: 585,046,534
  Number of sequences in database:  8,438,646



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5